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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4445522_4448586_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4445522 - 4448586
Intron Length:
3065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCGCCCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CCCTCCTTACCC
Flanking Amino Acid:
MFQWKKTIYKTLC
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
68.9
0.43
0.8
62.2
28.7
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
62
0.36
1.7
65.58
46.5

Associated Gene:

Gene:
B3GNT7
Ensembl Gene ID:
ENSAPLG00000013348
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013896
4444300 - 4448597
4298