Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4487058_4489122_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4487058 - 4489122

Intron Length:

2065

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACTTGTA

5'SS Class:

major

3'SS Sequence:

TTCTTCCTCTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAG

U12 Branch Point Sequence:

GTGGTCTGACTA

Flanking Amino Acid:

SDLLGHENHEIQPYVNGALY

Intron Amino Acid Position:

518

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.5

0.65

74.5

35.9

Major BPS

67.5

0.43

1.5

65.7

43.2

Major PPT

81.8

0.72

0.7

81.3

23.8

Minor 5ss

35.3

-1.7

3.5

49.6

46.6

Minor BPS

44.9

-0.3

1.7

51.87

40.6

Associated Gene:

Gene:

ARMC9

Ensembl Gene ID:

ENSAPLG00000013385

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030253

4464224 - 4525247

61024

ENSAPLT00000013978

4464224 - 4525247

61024