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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4494378_4495369_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4494378 - 4495369
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTGTTTTTTT
Flanking Amino Acid:
KAFLLQALRWRLTTSYPGEQ
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.1
44.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.2
0.88
0.7
88.9
28.2
Minor 5ss
31.6
-2.1
3.1
31.9
42.5
Minor BPS
39.7
-0.7
3.7
74.98
42.6

Associated Gene:

Gene:
ARMC9
Ensembl Gene ID:
ENSAPLG00000013385
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030253
4464224 - 4525247
61024
ENSAPLT00000013978
4464224 - 4525247
61024