Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4503183_4510514_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4503183 - 4510514

Intron Length:

7332

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTTGCCCATAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCTTCTTTATTT

Flanking Amino Acid:

QSIDFTRPGTGYYSMSPCDD

Intron Amino Acid Position:

294

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

32.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

64.9

0.34

1.1

64.6

Minor 5ss

43.9

-0.7

2.9

66.1

38.6

Minor BPS

0.71

1.5

83.14

Associated Gene:

Gene:

ARMC9

Ensembl Gene ID:

ENSAPLG00000013385

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030253

4464224 - 4525247

61024