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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4533083_4533903_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
4533083 - 4533903
Intron Length:
821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAATCT
5'SS Class:
major
3'SS Sequence:
CCCCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
GTTTGCTTTTCT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
68.6
37
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
80
0.68
0.7
71.9
32.7
Minor 5ss
38.9
-1.3
3.4
57.4
46.7
Minor BPS
41.5
-0.5
3.8
76.83
45.4

Associated Gene:

Gene:
PSMD1
Ensembl Gene ID:
ENSAPLG00000013690
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014412
4532868 - 4599525
66658