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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4534059_4536470_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4534059 - 4536470
Intron Length:
2412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
ACTTGTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTGCTTCTAACG
Flanking Amino Acid:
ESCRYQPFKPLSIGGIIILK
Intron Amino Acid Position:
898

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80.1
0.68
0.9
73.4
36.4
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
47.9
-0.2
1.7
52.52
42.6

Associated Gene:

Gene:
PSMD1
Ensembl Gene ID:
ENSAPLG00000013690
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014412
4532868 - 4599525
66658