Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4538391_4539990_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4538391 - 4539990

Intron Length:

1600

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTTGGG

5'SS Class:

major

3'SS Sequence:

CTGACATATCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAA

U12 Branch Point Sequence:

TCATACTGAACG

Flanking Amino Acid:

EVPKEKEKEKVSTAVLSITA

Intron Amino Acid Position:

818

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

1.1

61.6

43.1

Major BPS

74.4

0.61

0.9

63.6

35.5

Major PPT

0.34

55.1

43.9

Minor 5ss

38.2

-1.3

3.1

49.7

46.5

Minor BPS

57.3

0.09

1.8

62.52

44.6

Associated Gene:

Gene:

PSMD1

Ensembl Gene ID:

ENSAPLG00000013690

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032855

4537229 - 4599525

62297

ENSAPLT00000014412

4532868 - 4599525

66658