Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4540084_4541769_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4540084 - 4541769

Intron Length:

1686

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGTAAC

5'SS Class:

strong_major

3'SS Sequence:

CTGTTTTTCTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

TTTTTTTTAACT

Flanking Amino Acid:

CVIGLNKDLKMPKVQYKSNC

Intron Amino Acid Position:

787

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

81.6

32.3

Major BPS

87.3

0.93

0.8

36.5

Major PPT

80.6

0.69

0.8

80.5

31.5

Minor 5ss

-1.7

2.9

44.9

43.1

Minor BPS

88.9

1.3

0.8

99.22

Associated Gene:

Gene:

PSMD1

Ensembl Gene ID:

ENSAPLG00000013690

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032855

4537229 - 4599525

62297

ENSAPLT00000014412

4532868 - 4599525

66658