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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4567704_4573986_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4567704 - 4573986
Intron Length:
6283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTAATGAGTT
Flanking Amino Acid:
MPIALLIILFDNAWPLPTAL
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
87.5
0.84
0.7
85.1
29.7
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
45.1
-0.2
2
67.25
43.3

Associated Gene:

Gene:
HTR2B
Ensembl Gene ID:
ENSAPLG00000015179
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015817
4567021 - 4577152
10132