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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4590914_4591576_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4590914 - 4591576
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAC
U12 Branch Point Sequence:
ATTACCTAACCT
Flanking Amino Acid:
HCGTTSDQFLRDNLEWLARA
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
74
36.5
Major BPS
58.2
0.21
1
49.8
34.7
Major PPT
89.8
0.9
0.7
84.2
30.9
Minor 5ss
33.9
-1.8
2.9
42.4
44.3
Minor BPS
56.7
0.29
2
79.06
42.9

Associated Gene:

Gene:
PSMD1
Ensembl Gene ID:
ENSAPLG00000013690
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014412
4532868 - 4599525
66658
ENSAPLT00000032855
4537229 - 4599525
62297