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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4591666_4592452_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4591666 - 4592452
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CTGGCTGTGATA
Flanking Amino Acid:
TDLMILKNTKDAVRNSVCHT
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
44.4
-0.4
2
52.53
41

Associated Gene:

Gene:
PSMD1
Ensembl Gene ID:
ENSAPLG00000013690
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014412
4532868 - 4599525
66658
ENSAPLT00000032855
4537229 - 4599525
62297