Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4598265_4599251_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4598265 - 4599251

Intron Length:

987

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGCAAC

5'SS Class:

strong_major

3'SS Sequence:

AATATCTTTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

ATTTCTTTAATA

Flanking Amino Acid:

DNSEYVETIIAKCIDHYTKQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

74.1

36.5

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

78.3

0.64

0.9

74.2

40.4

Minor 5ss

39.8

-1.1

2.9

48.9

41.6

Minor BPS

83.5

1.05

0.9

85.51

26.7

Associated Gene:

Gene:

PSMD1

Ensembl Gene ID:

ENSAPLG00000013690

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032855

4537229 - 4599525

62297

ENSAPLT00000014412

4532868 - 4599525

66658