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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_461212_496527_F

Intron Information:

Intron Rank:
131998
Intron Class:
major
Intron Phase:
Intron Coordinates:
461212 - 496527
Intron Length:
35316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTAACTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTTTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
82.6
0.73
0.9
82.5
32.9
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
82.6
1.1
1
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020890
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038914
461056 - 503383
42328