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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4616712_4617608_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4616712 - 4617608
Intron Length:
897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCAGAA
U12 Branch Point Sequence:
GTGCTCAGAACC
Flanking Amino Acid:
KRCAYVYKAKNNTATPGGKP
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
52.6
0.07
1
50.3
35.4
Major PPT
82.1
0.72
0.8
80.6
31.5
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
47.6
-0.2
1.7
58.55
39.6

Associated Gene:

Gene:
RPL35A
Ensembl Gene ID:
ENSAPLG00000024971
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036490
4616278 - 4619170
2893