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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4617762_4618723_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4617762 - 4618723
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCAATGTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ACTGAGTTAATT
Flanking Amino Acid:
MSGRLWSKAIFAG
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
73.5
0.53
1
69.6
41.3
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
47.3
-0.1
2.3
66.68
44.5

Associated Gene:

Gene:
RPL35A
Ensembl Gene ID:
ENSAPLG00000024971
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036490
4616278 - 4619170
2893