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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4625725_4627224_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4625725 - 4627224
Intron Length:
1500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAGTT
5'SS Class:
major
3'SS Sequence:
CATTTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GTGTATTCAAGT
Flanking Amino Acid:
KKNKFHDTLIREEEGKKEIK
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.2
78.9
35.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
84.2
0.77
0.8
81.6
30
Minor 5ss
31.8
-2.1
3.5
47.6
47.9
Minor BPS
47.2
-0.1
2
65.76
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019055
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039540
4619789 - 4627375
7587