About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4653784_4656387_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4653784 - 4656387
Intron Length:
2604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGAGC
5'SS Class:
major
3'SS Sequence:
TGTTTATCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TACTCTTTTACT
Flanking Amino Acid:
IKRRPGTRKQSDDRSTISPG
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
66.3
39.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.2
0.66
0.9
73.4
36.2
Minor 5ss
26.5
-2.7
3
33.9
41.8
Minor BPS
68.2
0.65
1.6
80.72
41.1

Associated Gene:

Gene:
LRCH3
Ensembl Gene ID:
ENSAPLG00000015330
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020407
4642921 - 4703526
60606