Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4653784_4660933_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4653784 - 4660933

Intron Length:

7150

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGACTC

5'SS Class:

strong_major

3'SS Sequence:

TGTTTATCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

TACTCTTTTACT

Flanking Amino Acid:

TQKQSPLDSESDDRSTISPG

Intron Amino Acid Position:

580

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

35.3

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

79.2

0.66

0.9

73.4

36.2

Minor 5ss

36.5

-1.5

3.2

50.8

45.8

Minor BPS

68.2

0.65

1.6

80.72

41.1

Associated Gene:

Gene:

LRCH3

Ensembl Gene ID:

ENSAPLG00000015330

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033629

4645800 - 4703526

57727