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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4659710_4660933_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4659710 - 4660933
Intron Length:
1224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TCCCACCTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGTTTCTGACAT
Flanking Amino Acid:
TQKQSPLDSECPFPSRRSQH
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
70.7
0.47
0.8
61.1
34.7
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
52.4
0.15
1.8
74.71
41.6

Associated Gene:

Gene:
LRCH3
Ensembl Gene ID:
ENSAPLG00000015330
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029219
4645800 - 4703526
57727
ENSAPLT00000020407
4642921 - 4703526
60606
ENSAPLT00000047526
4630494 - 4703526
73033
ENSAPLT00000016006
4642538 - 4703526
60989
ENSAPLT00000044020
4642921 - 4703526
60606
ENSAPLT00000033939
4645800 - 4703526
57727