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Intron Name: Anas_platyrhynchos_platyrhynchos_9_4660982_4661629_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4660982 - 4661629

Intron Length:

648

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTACCTCCT

5'SS Class:

weak_major

3'SS Sequence:

TTTTTCTCTATAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTTCTCTATA

Flanking Amino Acid:

QREAVLDFVKQKASLSTQKQ

Intron Amino Acid Position:

564

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.8

0.28

1.2

60.2

44.6

Major BPS

90.4

0.7

90.2

19.3

Major PPT

88.9

0.88

0.6

22.7

Minor 5ss

-0.8

3.1

59.7

38.8

Minor BPS

58.2

0.25

1.8

74.89

36.5

Associated Gene:

Gene:

LRCH3

Ensembl Gene ID:

ENSAPLG00000015330

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029219

4645800 - 4703526

57727

ENSAPLT00000047526

4630494 - 4703526

73033

ENSAPLT00000020407

4642921 - 4703526

60606

ENSAPLT00000044020

4642921 - 4703526

60606

ENSAPLT00000016006

4642538 - 4703526

60989

ENSAPLT00000033939

4645800 - 4703526

57727

ENSAPLT00000033629

4645800 - 4703526

57727