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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4661978_4662405_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4661978 - 4662405
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
ATATACTTACTC
Flanking Amino Acid:
VLRSYVDRTERPPADSPYLL
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
76.4
0.59
1
76.4
37.3
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
55.8
0.16
1.8
66.71
38.8

Associated Gene:

Gene:
LRCH3
Ensembl Gene ID:
ENSAPLG00000015330
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029219
4645800 - 4703526
57727
ENSAPLT00000020407
4642921 - 4703526
60606
ENSAPLT00000047526
4630494 - 4703526
73033
ENSAPLT00000016006
4642538 - 4703526
60989
ENSAPLT00000033939
4645800 - 4703526
57727
ENSAPLT00000033629
4645800 - 4703526
57727