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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4670289_4671045_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4670289 - 4671045
Intron Length:
757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGTTTCTTCACC
Flanking Amino Acid:
SGDKRWSGNEPTDEFSDLPL
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
77.5
0.68
1
79.6
33
Major PPT
77.7
0.62
1
78.9
33.5
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
69.1
0.58
1.7
78.59
37

Associated Gene:

Gene:
LRCH3
Ensembl Gene ID:
ENSAPLG00000015330
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029219
4645800 - 4703526
57727
ENSAPLT00000047526
4630494 - 4703526
73033
ENSAPLT00000020407
4642921 - 4703526
60606
ENSAPLT00000044020
4642921 - 4703526
60606
ENSAPLT00000016006
4642538 - 4703526
60989
ENSAPLT00000033939
4645800 - 4703526
57727
ENSAPLT00000033629
4645800 - 4703526
57727