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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4673982_4674963_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4673982 - 4674963
Intron Length:
982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGC
5'SS Class:
major
3'SS Sequence:
TTTAAATTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
NNPLQSPPAQICIKGKIHIF
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
66.5
40.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72
0.5
0.9
65.9
39.6
Minor 5ss
43.5
-0.7
3
59.3
45.5
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
LRCH3
Ensembl Gene ID:
ENSAPLG00000015330
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029219
4645800 - 4703526
57727
ENSAPLT00000047526
4630494 - 4703526
73033
ENSAPLT00000020407
4642921 - 4703526
60606
ENSAPLT00000044020
4642921 - 4703526
60606
ENSAPLT00000016006
4642538 - 4703526
60989
ENSAPLT00000033939
4645800 - 4703526
57727
ENSAPLT00000033629
4645800 - 4703526
57727