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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4675101_4675282_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4675101 - 4675282
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TATTGTTTATTT
Flanking Amino Acid:
RRNHLVRLPEELAELPLIRL
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.1
24.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
86.8
0.83
0.7
81.8
28.9
Minor 5ss
31.8
-2.1
3
37.8
47
Minor BPS
55.4
0.25
2
76.5
40.9

Associated Gene:

Gene:
LRCH3
Ensembl Gene ID:
ENSAPLG00000015330
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016006
4642538 - 4703526
60989
ENSAPLT00000033939
4645800 - 4703526
57727
ENSAPLT00000033629
4645800 - 4703526
57727
ENSAPLT00000029219
4645800 - 4703526
57727
ENSAPLT00000047526
4630494 - 4703526
73033
ENSAPLT00000020407
4642921 - 4703526
60606
ENSAPLT00000044020
4642921 - 4703526
60606