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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4675389_4675714_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4675389 - 4675714
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TCGTGCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
ACACTCTTCACT
Flanking Amino Acid:
IGQLRQLTELDVSCNEIQTI
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
77.9
31.1
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
74.9
0.56
0.9
69.3
36.9
Minor 5ss
36.4
-1.5
2.9
48.3
41.8
Minor BPS
53.5
0.19
1.8
68.16
42.6

Associated Gene:

Gene:
LRCH3
Ensembl Gene ID:
ENSAPLG00000015330
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033629
4645800 - 4703526
57727
ENSAPLT00000029219
4645800 - 4703526
57727
ENSAPLT00000047526
4630494 - 4703526
73033
ENSAPLT00000020407
4642921 - 4703526
60606
ENSAPLT00000044020
4642921 - 4703526
60606
ENSAPLT00000016006
4642538 - 4703526
60989
ENSAPLT00000033939
4645800 - 4703526
57727