Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4675842_4677361_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4675842 - 4677361

Intron Length:

1520

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACAATT

5'SS Class:

strong_major

3'SS Sequence:

TCTGTCCAAAAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

CTGTCCAAAAAG

Flanking Amino Acid:

NLQSLTFLNISRNQLSTLPV

Intron Amino Acid Position:

162

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

1.1

84.6

33.3

Major BPS

84.4

0.85

1.1

34.5

Major PPT

56.2

0.14

1.1

57.6

36.8

Minor 5ss

-0.5

66.7

44.2

Minor BPS

45.8

-0.4

2.1

53.28

47.1

Associated Gene:

Gene:

LRCH3

Ensembl Gene ID:

ENSAPLG00000015330

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029219

4645800 - 4703526

57727

ENSAPLT00000047526

4630494 - 4703526

73033

ENSAPLT00000020407

4642921 - 4703526

60606

ENSAPLT00000044020

4642921 - 4703526

60606

ENSAPLT00000016006

4642538 - 4703526

60989

ENSAPLT00000033939

4645800 - 4703526

57727

ENSAPLT00000033629

4645800 - 4703526

57727