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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4677507_4703186_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4677507 - 4703186
Intron Length:
25680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGGAC
5'SS Class:
major
3'SS Sequence:
TCTTCCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTCACGGAATG
Flanking Amino Acid:
NHDLSDTTRADLSRNRLSEL
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
63.9
36.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.5
0.78
0.7
81.7
23.3
Minor 5ss
24.6
-2.9
3.4
32.4
42.7
Minor BPS
42.1
-0.7
2.2
50.59
43.6

Associated Gene:

Gene:
LRCH3
Ensembl Gene ID:
ENSAPLG00000015330
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033629
4645800 - 4703526
57727
ENSAPLT00000029219
4645800 - 4703526
57727
ENSAPLT00000047526
4630494 - 4703526
73033
ENSAPLT00000020407
4642921 - 4703526
60606
ENSAPLT00000044020
4642921 - 4703526
60606
ENSAPLT00000016006
4642538 - 4703526
60989
ENSAPLT00000033939
4645800 - 4703526
57727