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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4706192_4707306_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4706192 - 4707306
Intron Length:
1115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTATTTTATTT
Flanking Amino Acid:
QFDINSVGKQTGMTLNERFG
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
83.9
27.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
35.6
-1.6
3.4
49
47.2
Minor BPS
57.3
0.31
1.6
74.19
37.2

Associated Gene:

Gene:
FYTTD1
Ensembl Gene ID:
ENSAPLG00000015624
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016301
4706096 - 4719035
12940