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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4707434_4708245_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4707434 - 4708245
Intron Length:
812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTTTG
5'SS Class:
major
3'SS Sequence:
TCTTCTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TCTTCTTTCACA
Flanking Amino Acid:
IDNPGAILAPVSQKLRLTRT
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
67.8
39.9
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
87.4
0.84
0.7
83
25.5
Minor 5ss
40.4
-1.1
3
50
46.2
Minor BPS
69.7
0.62
1.7
78.6
38.6

Associated Gene:

Gene:
FYTTD1
Ensembl Gene ID:
ENSAPLG00000015624
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016301
4706096 - 4719035
12940