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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4708321_4708968_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4708321 - 4708968
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCAAACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTTTCAAACT
Flanking Amino Acid:
LDNQTVKRTRQWRTSTTSGG
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
63.8
0.31
1
57.7
42.3
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
52.1
0.14
2
76.65
40.1

Associated Gene:

Gene:
FYTTD1
Ensembl Gene ID:
ENSAPLG00000015624
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016301
4706096 - 4719035
12940