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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4710004_4711559_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4710004 - 4711559
Intron Length:
1556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
CTAAATATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTTTTCTAAATA
Flanking Amino Acid:
VLRRPAPLNRRNNMPSAFAR
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
70
0.45
1
61.9
42.8
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
66.4
0.51
1.6
75.34
36.5

Associated Gene:

Gene:
FYTTD1
Ensembl Gene ID:
ENSAPLG00000015624
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016301
4706096 - 4719035
12940