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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4711673_4712713_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4711673 - 4712713
Intron Length:
1041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
PLNRQPLSEKNAQRNYPVLK
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
88.9
24.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.9
0.63
1
82.4
26.6
Minor 5ss
37.5
-1.4
2.8
51.2
45.3
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
FYTTD1
Ensembl Gene ID:
ENSAPLG00000015624
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016301
4706096 - 4719035
12940