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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4729552_4730412_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4729552 - 4730412
Intron Length:
861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CATTTGTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTCACCTTAACA
Flanking Amino Acid:
SPSSAHHLEKFISLHENGQP
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
80.5
33.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
81.7
0.71
0.9
72.9
41.9
Minor 5ss
31.4
-2.1
2.9
42.1
44.5
Minor BPS
74.8
0.77
1.3
75.92
41.5

Associated Gene:

Gene:
RUBCN
Ensembl Gene ID:
ENSAPLG00000028807
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023500
4722032 - 4733428
11397