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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4730573_4731422_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4730573 - 4731422
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
AGCCCCCTGACA
Flanking Amino Acid:
NRQYIRKFYADTAFLLSDAH
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
78.7
0.65
0.7
73.3
24.9
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
50.6
0.01
1.7
60.24
39

Associated Gene:

Gene:
RUBCN
Ensembl Gene ID:
ENSAPLG00000028807
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023500
4722032 - 4733428
11397