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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4732484_4732803_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4732484 - 4732803
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGTCTGTC
5'SS Class:
weak_major
3'SS Sequence:
GCTCCAGCACCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGGAGAC
U12 Branch Point Sequence:
TGCTCCAGCACC
Flanking Amino Acid:
LEAHLSPLLTRQPQEHCPAT
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.2
59.6
39.7
Major BPS
42.2
-0.4
1.1
29.9
33.6
Major PPT
57.6
0.17
1
48
39.5
Minor 5ss
43.9
-0.7
3.1
60.8
44.4
Minor BPS
46.2
-0.3
2.2
61.12
43.7

Associated Gene:

Gene:
RUBCN
Ensembl Gene ID:
ENSAPLG00000028807
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023500
4722032 - 4733428
11397