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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4774483_4774759_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4774483 - 4774759
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCCTGC
5'SS Class:
weak_major
3'SS Sequence:
TCTCTTTACGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TAACCCCAAACC
Flanking Amino Acid:
AAGNVLIGFSSGDGYARNNE
Intron Amino Acid Position:
1337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.7
0.25
1.2
51.2
42.9
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
80
0.67
0.8
76.6
30.9
Minor 5ss
43.2
-0.7
3.1
59.3
45.4
Minor BPS
48.9
-0.1
2
63.25
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010743
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011181
4770596 - 4779744
9149