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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4775486_4775734_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4775486 - 4775734
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
TGATTTTGGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTAAT
U12 Branch Point Sequence:
TAATGGGTGATT
Flanking Amino Acid:
FGKALRDSLYFTDNGQIIFP
Intron Amino Acid Position:
1189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
78.3
32.5
Major BPS
64.2
0.35
1.3
65.8
39.5
Major PPT
68.6
0.42
1.1
69.4
45.8
Minor 5ss
40.7
-1
2.9
51.8
38.6
Minor BPS
38.6
-0.8
2.7
59.89
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010743
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011181
4770596 - 4779744
9149