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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4781938_4782038_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4781938 - 4782038
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATCT
Flanking Amino Acid:
LLDPCGSSRQKR*
Intron Amino Acid Position:
1240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
74.8
0.56
0.7
68.5
25
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
72.1
0.77
1.8
92.57
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024440
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018600
4780931 - 4793631
12701
ENSAPLT00000040135
4781931 - 4801342
19412
ENSAPLT00000025176
4780931 - 4793631
12701