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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4785585_4787128_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4785585 - 4787128
Intron Length:
1544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
CCCCGCTGAGCC
Flanking Amino Acid:
QCWGFPDKIDELYLGNPMDP
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1
70.6
35.2
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
78.7
0.65
0.7
73.3
24.9
Minor 5ss
34.1
-1.8
2.9
37
41.1
Minor BPS
40.7
-0.7
2
44.11
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024440
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040135
4781931 - 4801342
19412
ENSAPLT00000025176
4780931 - 4793631
12701
ENSAPLT00000018600
4780931 - 4793631
12701