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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4790396_4790495_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4790396 - 4790495
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
GCCTGCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTAAC
U12 Branch Point Sequence:
CACCCCGTAACG
Flanking Amino Acid:
EPWIGLNGSQILHKIDKEGE
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
49.8
-0
1.2
52.9
39.1
Major PPT
65.4
0.35
0.9
57.7
33.3
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
48.7
-0.2
2.1
53.69
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024440
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040135
4781931 - 4801342
19412
ENSAPLT00000025176
4780931 - 4793631
12701
ENSAPLT00000018600
4780931 - 4793631
12701