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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4790623_4790733_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4790623 - 4790733
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCCTG
5'SS Class:
major
3'SS Sequence:
GTCCTTCGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CCCTCCTGATGC
Flanking Amino Acid:
MQEHRKVPFAWCAPESLKTR
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.4
44.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
70.6
0.46
0.9
68.7
37.2
Minor 5ss
36.2
-1.6
3.2
44.4
44.4
Minor BPS
44.7
-0.4
2
50.27
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024440
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040135
4781931 - 4801342
19412
ENSAPLT00000025176
4780931 - 4793631
12701
ENSAPLT00000018600
4780931 - 4793631
12701