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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4792623_4792772_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4792623 - 4792772
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGCGTTAC
5'SS Class:
major
3'SS Sequence:
CCCTGTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
TTTTTGGTGACG
Flanking Amino Acid:
DLEKIGMGRPGQRRLWEAVK
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
65.9
36.4
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
71.2
0.48
0.9
64.3
36.7
Minor 5ss
34.5
-1.8
3.1
43.5
44.3
Minor BPS
46.2
-0.4
2.7
65.53
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024440
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040135
4781931 - 4801342
19412
ENSAPLT00000025176
4780931 - 4793631
12701
ENSAPLT00000018600
4780931 - 4793631
12701