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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4808994_4809406_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4808994 - 4809406
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTCAATACCT
Flanking Amino Acid:
DKVGSSWVKSIVPFGLDNAA
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
85.4
0.8
0.7
80.1
25.2
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
52.1
0.14
2.1
79.79
41.5

Associated Gene:

Gene:
TFRC
Ensembl Gene ID:
ENSAPLG00000002774
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002850
4806088 - 4817467
11380