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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4814031_4814657_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4814031 - 4814657
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGACACTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TGACACTTAACA
Flanking Amino Acid:
KHYIKLQVKGSTKNKVSVVE
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
64.8
0.33
1
58.5
41.4
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
66.2
0.5
1.5
72.37
38.5

Associated Gene:

Gene:
TFRC
Ensembl Gene ID:
ENSAPLG00000002774
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002850
4806088 - 4817467
11380