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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4815236_4815799_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4815236 - 4815799
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCTTTCTGACGT
Flanking Amino Acid:
LIAAFLLLLIGFLIGYLSYR
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.4
37.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
88.3
0.86
0.6
85.2
22.2
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
49.2
0.02
2
71.74
45.4

Associated Gene:

Gene:
TFRC
Ensembl Gene ID:
ENSAPLG00000002774
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002850
4806088 - 4817467
11380