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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4816014_4817396_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4816014 - 4817396
Intron Length:
1383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCGACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAT
U12 Branch Point Sequence:
TCTACCATCACA
Flanking Amino Acid:
DHARAAISNLFSGEPMSYTR
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
67.8
37.5
Major BPS
68.9
0.47
1
75
30
Major PPT
73.7
0.53
0.9
68.7
36.3
Minor 5ss
32.4
-2
3.1
39.7
40.1
Minor BPS
51.6
0.04
2.1
69.02
43.1

Associated Gene:

Gene:
TFRC
Ensembl Gene ID:
ENSAPLG00000002774
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002850
4806088 - 4817467
11380