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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4830253_4830338_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4830253 - 4830338
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCTTCCTCACCA
Flanking Amino Acid:
SMMVVEMATTMYFSICFYLL
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79.9
34.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
77.3
0.61
0.8
70.8
34.7
Minor 5ss
34.4
-1.8
2.9
47
41.7
Minor BPS
62.9
0.4
1.9
75.44
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027071
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029703
4829545 - 4831693
2149
ENSAPLT00000037496
4829410 - 4831693
2284
ENSAPLT00000034689
4829545 - 4831693
2149