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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4834922_4835400_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4834922 - 4835400
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCACCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
CTCTCGCTAACG
Flanking Amino Acid:
LEMFGPEGALKHMLKEGKGR
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
69.6
41.1
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
68.8
0.42
0.9
59
36.9
Minor 5ss
32.8
-2
3.1
39.9
40.3
Minor BPS
47.7
-0.3
2.4
59.61
47.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003305
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029174
4831877 - 4849265
17389