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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4849266_4849575_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4849266 - 4849575
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CATTTTGTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTCCTTCATT
Flanking Amino Acid:
MIYNSHCNSWFLLDALGEME
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
78.3
32.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.8
0.6
0.9
68.8
41.6
Minor 5ss
38.9
-1.3
2.9
44.3
43.6
Minor BPS
72.9
0.8
1.7
87.41
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003305
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003381
4835170 - 4849605
14436