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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4867355_4867739_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4867355 - 4867739
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGACC
5'SS Class:
major
3'SS Sequence:
TGTTACTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
ACCTCCTAACCA
Flanking Amino Acid:
GYCLVTYRRGDVQKPPSENT
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67
35.3
Major BPS
72
0.55
1
71.8
31.4
Major PPT
83.5
0.75
0.9
77.3
36.6
Minor 5ss
26.7
-2.7
3.2
34.1
41.8
Minor BPS
49.8
-0
2
60.87
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003601
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003671
4863757 - 4868687
4931